* Colony: A group of organisms living together.
* Taxonomy: The science of classification.
* Polyphony: The use of multiple independent melodic lines in a musical composition.
* Morphology: The study of the form and structure of organisms.
* Prony: A unit of power, not as commonly used as others.
There might be other less common words ending in "ony" related to specific fields, but these are the most well-known.