General:
* Pile of timber
* Stack of timber
* Load of timber
* Supply of timber
* Stock of timber
Specific:
* Flitch (for a large piece of timber split lengthwise)
* Battens (for thin, narrow strips of timber)
* Planks (for flat, rectangular pieces of timber)
* Logs (for the raw, unprocessed timber)
Ultimately, the best collective noun will depend on the specific situation and what you are trying to communicate.